Command line: /scratch2/software/anaconda/envs/eukfinder/bin/metaspades.py	-t	20	-m	100	--pe1-1	/misc/scratch3/Eukfinder/DB/test_files/short_reads_workflow/Intermediate_data/Classified_reads/first_round.EUnk.R1.fq	--pe1-2	/misc/scratch3/Eukfinder/DB/test_files/short_reads_workflow/Intermediate_data/Classified_reads/first_round.EUnk.R2.fq	--pe1-s	/misc/scratch3/Eukfinder/DB/test_files/short_reads_workflow/Intermediate_data/Classified_reads/first_round.EUnk.un.fq	-o	/misc/scratch3/Eukfinder/DB/test_files/short_reads_workflow/Intermediate_data/first_round_metaspades_out	-k	21,33,55	

System information:
  SPAdes version: 3.13.1
  Python version: 3.6.15
  OS: Linux-4.15.0-118-generic-x86_64-with-debian-buster-sid

Output dir: /misc/scratch3/Eukfinder/DB/test_files/short_reads_workflow/Intermediate_data/first_round_metaspades_out
Mode: read error correction and assembling
Debug mode is turned OFF

Dataset parameters:
  Metagenomic mode
  Reads:
    Library number: 1, library type: paired-end
      orientation: fr
      left reads: ['/misc/scratch3/Eukfinder/DB/test_files/short_reads_workflow/Intermediate_data/Classified_reads/first_round.EUnk.R1.fq']
      right reads: ['/misc/scratch3/Eukfinder/DB/test_files/short_reads_workflow/Intermediate_data/Classified_reads/first_round.EUnk.R2.fq']
      interlaced reads: not specified
      single reads: ['/misc/scratch3/Eukfinder/DB/test_files/short_reads_workflow/Intermediate_data/Classified_reads/first_round.EUnk.un.fq']
      merged reads: not specified
Read error correction parameters:
  Iterations: 1
  PHRED offset will be auto-detected
  Corrected reads will be compressed
Assembly parameters:
  k: [21, 33, 55]
  Repeat resolution is enabled
  Mismatch careful mode is turned OFF
  MismatchCorrector will be SKIPPED
  Coverage cutoff is turned OFF
Other parameters:
  Dir for temp files: /misc/scratch3/Eukfinder/DB/test_files/short_reads_workflow/Intermediate_data/first_round_metaspades_out/tmp
  Threads: 20
  Memory limit (in Gb): 100