bioinformatics_tools2
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| Both sides previous revisionPrevious revisionNext revision | Previous revision | ||
| bioinformatics_tools2 [2021/10/08 17:07] – 134.190.232.9 | bioinformatics_tools2 [2022/02/28 11:53] (current) – 134.190.232.106 | ||
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| Line 5: | Line 5: | ||
| < | < | ||
| + | #script: shell.sh | ||
| #!/bin/bash | #!/bin/bash | ||
| Line 27: | Line 28: | ||
| This script need you have a list of sequence name and sensitive with only ID. Run the script like this: | This script need you have a list of sequence name and sensitive with only ID. Run the script like this: | ||
| + | |||
| + | Note: $line.ko.txt VS $line_ko.txt, | ||
| < | < | ||
| - | #pure name list file of your fasta, e.g. | + | #pure name_list |
| Gene1 | Gene1 | ||
| Gene2 | Gene2 | ||
| Line 47: | Line 50: | ||
| ./shell.sh name_list.txt | ./shell.sh name_list.txt | ||
| </ | </ | ||
| + | |||
| + | # must leave one line break for the list.txt file, otherwise the last line will not be proceeded. | ||
| Line 91: | Line 96: | ||
| If you are familiar with ${SGE_TASK_ID}, | If you are familiar with ${SGE_TASK_ID}, | ||
| - | - Method one: using ' | + | * Method one: using ' |
| < | < | ||
| Line 99: | Line 104: | ||
| # So in this case: -query / | # So in this case: -query / | ||
| # will be renamed to | # will be renamed to | ||
| - | # -query / | + | # -query / |
| # Technically, | # Technically, | ||
| </ | </ | ||
| Line 136: | Line 141: | ||
| </ | </ | ||
| - | | + | * Method two: Run shell script split.sh |
| < | < | ||
bioinformatics_tools2.1633723647.txt.gz · Last modified: by 134.190.232.9