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bioinformatics_tools2 [2021/12/15 12:46] – 134.190.232.106bioinformatics_tools2 [2022/02/28 11:53] (current) – 134.190.232.106
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 This script need you have a list of sequence name and sensitive with only ID. Run the script like this: This script need you have a list of sequence name and sensitive with only ID. Run the script like this:
 +
 +Note: $line.ko.txt VS $line_ko.txt, the later one cannot be recognized due to "_" before ko.txt, so I suggest avoid "_" before ko.txt.
  
 <code> <code>
-#pure name list file of your fasta, e.g.+#pure name_list file of your fasta, e.g.
 Gene1 Gene1
 Gene2 Gene2
Line 48: Line 50:
 ./shell.sh name_list.txt ./shell.sh name_list.txt
 </code>  </code> 
 +
 +# must leave one line break for the list.txt file, otherwise the last line will not be proceeded.
  
  
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   # So in this case: -query /misc/scratch2/####/${SGE_TASK_ID}.fa   # So in this case: -query /misc/scratch2/####/${SGE_TASK_ID}.fa
   #  will be renamed to    #  will be renamed to 
-  # -query /misc/scratch2/####/**0**{SGE_TASK_ID}+  # -query /misc/scratch2/####/0{SGE_TASK_ID}
   # Technically, you can change 0 to whatever you want it is just a file name prefix.   # Technically, you can change 0 to whatever you want it is just a file name prefix.
   </code>   </code>
bioinformatics_tools2.1639586782.txt.gz · Last modified: by 134.190.232.106