Differences

This shows you the differences between two versions of the page.

--- bioinformatics_tools3 [2021/10/09 13:28] – 134.190.232.9
+++ bioinformatics_tools3 [2022/03/15 10:28] (current) – 134.190.232.106
@@ Line 31: / Line 31: @@
 If you are new to InterProScan, please find detailed usage at the Step #6 in (Zhang et.al 2021)(https://doi.org/10.1016/j.xpro.2021.100619)
-   * Step Two: Run the interproscan_to_one_line.py script which can be found via (https://github.com/zx0223winner/NoBadWordsCombiner/tree/main/Tutorial/InterProScan_Parser)
+   * Step Two: Run the interproscan_to_one_line.py script which can be found via (https://github.com/zx0223winner/InterProScan_Parser)
 <code>
@@ Line 43: / Line 43: @@
 GCF_000001405.39_GRCh38.p13_protein.faa
-The directory is upcoming soon,
+. This protein includes alternative splicing transcripts translated proteins (e.g.,XX.t1, XX.t2, XX.t3)
+Use this script (isoform2one https://github.com/zx0223winner/isoform2one) to select the primary transcript protein sequence (longest transcript)
+. Then run the Interproscan analysis. Results documented here: /misc/scratch2/xizhang/HSDatabase/Results/Interproscan_
 <Last updated by Xi Zhang on Oct 8th,2021>