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--- blast_and_plast [2024/06/11 11:50] – 129.173.94.151
+++ blast_and_plast [2024/11/04 10:14] (current) – 110.239.172.216
@@ Line 26: / Line 26: @@
 #$ -S /bin/bash
 . /etc/profile
-#$ -pe threaded 1
+#$ -pe threaded 10
 #$ -cwd
 source activate blast
@@ Line 32: / Line 32: @@
 DB=nt
 query=your_query.fasta
-blastn -db $DB -query $query -out yourqueryresults.blout -num_threads 1 -outfmt "6 qseqid sseqid evalue pident qcovs length slen qlen qstart qend sstart send stitle"
+blastn -db $DB -query $query -out yourqueryresults.blout -num_threads 10 -outfmt "6 qseqid sseqid evalue pident qcovs length slen qlen qstart qend sstart send stitle"
-source deactivate
+conda deactivate
 </code>