Differences

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--- decontamination_using_read_classifier_a.k.a_eukfinder [2025/04/28 12:18] – 64.66.218.10
+++ decontamination_using_read_classifier_a.k.a_eukfinder [2026/01/21 12:34] (current) – 172.20.46.175
@@ Line 4: / Line 4: @@
 A bioinformatics tool designed to enable rapid recovery of high-quality draft genomes of microbial eukaryotes from various environmental metagenomic samples.
+Github:
 https://github.com/RogerLab/Eukfinder
+Use Guide (work in process):
+https://github.com/RogerLab/Eukfinder/wiki
+Conda installation package:
+https://anaconda.org/bioconda/eukfinder
+Binning Workflow (work in process):
+https://github.com/RogerLab/MetagenomeBinningWorkflow
+Tips and Tricks Talk Slides:
+https://perun.biochem.dal.ca/downloads/icgvideo/TAT/TT_Apr24_Eukfinder_Anvio.pdf
+**Warning!** Eukfinder is not deadlock-safe, please avoid running parallel instances!
+-----------------------------------------------------------
 Updated Database Locations for Eukfinder (v1.2.4)
@@ Line 21: / Line 38: @@
 . Only Centrifuge_DB and PLAST_DB are required.
-. Eukfinder v1.2.4 is not yet installed globally on Perun.
+<Last updated by Jason Shao on Jan 21, 2026>
-//How to Run Eukfinder v1.2.4 on Perun//
-   source activate eukfinder
-   Eukfinder=/misc/scratch3/Eukfinder/eukfinder.py
-   python $Eukfinder [arguments]
-<Last updated by Dandan Zhao on Apr 28, 2025>