Differences

This shows you the differences between two versions of the page.

--- decontamination_using_read_classifier_a.k.a_eukfinder [2025/05/01 12:50] – 64.66.218.10
+++ decontamination_using_read_classifier_a.k.a_eukfinder [2026/01/21 12:34] (current) – 172.20.46.175
@@ Line 20: / Line 20: @@
 Tips and Tricks Talk Slides:
 https://perun.biochem.dal.ca/downloads/icgvideo/TAT/TT_Apr24_Eukfinder_Anvio.pdf
+**Warning!** Eukfinder is not deadlock-safe, please avoid running parallel instances!
 -----------------------------------------------------------
@@ Line 36: / Line 38: @@
 . Only Centrifuge_DB and PLAST_DB are required.
-. Eukfinder v1.2.4 is not yet installed globally on Perun.
+<Last updated by Jason Shao on Jan 21, 2026>
-//How to Run Eukfinder v1.2.4 on Perun//
-   source activate eukfinder
-   Eukfinder=/misc/scratch3/Eukfinder/eukfinder.py
-   python $Eukfinder [arguments]
-<Last updated by Dandan Zhao on Apr 28, 2025>