gene_prediction_with_braker2_pipeline
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| gene_prediction_with_braker2_pipeline [2025/11/18 12:21] – [Braker2] 134.190.191.148 | gene_prediction_with_braker2_pipeline [2025/11/18 14:23] (current) – [Genome-guided transcriptome assembly] 134.190.191.148 | ||
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| #$ -cwd | #$ -cwd | ||
| #$ -pe threaded 10 | #$ -pe threaded 10 | ||
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| cd $PWD | cd $PWD | ||
| + | |||
| source activate trinity-2.11-with-workaround | source activate trinity-2.11-with-workaround | ||
| - | Trinity --CPU 10 --max_memory 100G --genome_guided_bam yourgenome.fasta.sambamsorted.bam --genome_guided_max_intron 1000 --SS_lib_type RF | + | |
| + | Trinity | ||
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| + | | ||
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| conda deactivate | conda deactivate | ||
| </ | </ | ||
gene_prediction_with_braker2_pipeline.1763482918.txt.gz · Last modified: by 134.190.191.148