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perun_and_environments

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perun_and_environments [2018/06/27 20:55] – 24.138.71.142perun_and_environments [2018/12/12 11:06] (current) – 129.173.90.41
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-''**conda --version**''+''**conda %%--version%%**'' or ''**conda -V**''
  
 To see the list of all the environments on perun (it is very long!) To see the list of all the environments on perun (it is very long!)
  
-''**conda info --envs**''+''**conda info %%--envs%%**'' 
  
 The output should look like this at the top The output should look like this at the top
Line 35: Line 35:
 To search the list you can do something like this To search the list you can do something like this
  
-''**conda info --envs |grep blast **''\\+''**conda info %%--envs%% |grep blast **''\\
 or\\ or\\
 ''**conda env list |grep blast ]**''\\ ''**conda env list |grep blast ]**''\\
Line 116: Line 116:
  
 ''**source activate python36-generic**'' ''**source activate python36-generic**''
 +
 +**You are already in the environment and do not know what to do next**\\
 +
 +1- invoke the executable command (see your software manual).\\
 +
 +2- if no manual is available and you still don't know what executable to call:\\
 +
 +**let's say you want to use trnascan:**\\
 + conda env list|grep 'trnascan' \\
 + trnascan-se              /scratch2/software/anaconda/envs/trnascan-se\\
 + ls /scratch2/software/anaconda/envs/trnascan-se/bin/\\
 + then select your executable and directly invoke it within the environment:\\
 + tRNAscan-SE
 +
 +
 +
  
  
perun_and_environments.1530143729.txt.gz · Last modified: by 24.138.71.142