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phylogeny_protocol2 [2021/10/10 19:23] – 134.190.232.9phylogeny_protocol2 [2022/02/07 15:21] (current) – 134.190.232.106
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 +The GitHub resource for this protocol: https://github.com/zx0223winner/TreeTuner
 +
 **Background** **Background**
  
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 MDNKYTSSAQNVLVLAQEQAKYFKHQAVGTEHLLLALAIEKEGIASKILGQ MDNKYTSSAQNVLVLAQEQAKYFKHQAVGTEHLLLALAIEKEGIASKILGQ
 </code> </code>
 +
 +Directory to renamed MMETSP: /misc/scratch2/###/###/mmetsp
  
 Then with the two renamed database available, you could merge then by 'cat'. Then build the new merged database via 'makeblastdb'. Then Blast them again.8-) Then with the two renamed database available, you could merge then by 'cat'. Then build the new merged database via 'makeblastdb'. Then Blast them again.8-)
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 Based on the trimmed aligned seq, you can re-analysis more rigorous downstream IQ-tree analysis. Based on the trimmed aligned seq, you can re-analysis more rigorous downstream IQ-tree analysis.
 +
 +Note: not all genes' species have taxa.This have nothing to do with the updates of NCBI taxonomy.
 +
 +The '0' in Gene name 'CP_0177652116_0_Stygamoeba_regulata_BSH-02190019' is not a NCBI taxid. 
  
  
 <Last updated by Xi Zhang on Oct 6th,2021> <Last updated by Xi Zhang on Oct 6th,2021>
phylogeny_protocol2.1633904583.txt.gz · Last modified: by 134.190.232.9