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phylogeny_protocol5

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phylogeny_protocol5 [2022/02/07 15:07] – 134.190.232.106phylogeny_protocol5 [2022/02/08 14:02] (current) – 134.190.232.106
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 +**How to build a YAML file thereby setting up Conda environment?**
 +
 "//Users should be able to focus in their science, not in installing and managing software, so make it easy to them is fundamental.// " - Advice for Bioinformaticians. "//Users should be able to focus in their science, not in installing and managing software, so make it easy to them is fundamental.// " - Advice for Bioinformaticians.
  
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 <code> <code>
-conda create -n PhyloToL_linux python=3.6+conda create -n PhyloToL python=3.6
  
 # Since most scripts in PhyloToL are Python3, so we first start with installing the python dependencies. # Since most scripts in PhyloToL are Python3, so we first start with installing the python dependencies.
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 </code> </code>
  
-4. With all these done, user can yield an yaml file.+4. With all these done, user can yield an yaml file. 
  
-conda env export > PhyloToL_linux.yml+conda env export > PhyloToL.yml
  
 <code> <code>
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 </code> </code>
  
 +**Execute Yaml file**
 +
 + With this yaml file on hand, the new user can easily install PhyloToL software dependencies(except P4 and USEARCH) via below.
  
 <code> <code>
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 </code> </code>
  
 +<Last updated by Xi Zhang on Feb 8th,2022>
phylogeny_protocol5.1644260836.txt.gz · Last modified: by 134.190.232.106