running_alphafold_at_scale
Differences
This shows you the differences between two versions of the page.
| Both sides previous revisionPrevious revisionNext revision | Previous revision | ||
| running_alphafold_at_scale [2026/03/11 11:42] – [Searching the protein sequence databases] 172.20.54.200 | running_alphafold_at_scale [2026/03/11 11:51] (current) – 172.20.80.5 | ||
|---|---|---|---|
| Line 60: | Line 60: | ||
| === Preparing AlphaFold3 input query files === | === Preparing AlphaFold3 input query files === | ||
| - | AlphaFold3 is a little awkward with how it wants it input protein sequences formatted. Instead of a simple FASTA file, it requires a JSON file. Thankfully I found a relatively simple way of converting the FASTA into a JSON file using and editing slightly a python script I found online. It is called '' | + | AlphaFold3 is a little awkward with how it wants its input protein sequences formatted. Instead of a simple FASTA file, it requires a JSON file. Thankfully I found a relatively simple way of converting the FASTA into a JSON file using and editing slightly a python script I found online. It is called '' |
| < | < | ||
| Line 79: | Line 79: | ||
| === Submitting AlphaFold as an array job === | === Submitting AlphaFold as an array job === | ||
| - | If you want to run AlphaFold on many proteins, it may be pragmatic to submit these sequence | + | If you want to run AlphaFold on many proteins, it may be pragmatic to submit these sequence |
| < | < | ||
running_alphafold_at_scale.1773240133.txt.gz · Last modified: by 172.20.54.200