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short_read_assembly

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short_read_assembly [2019/09/09 08:07] – 24.138.68.92short_read_assembly [2019/09/09 08:17] (current) – 24.138.68.92
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 cd /to/the/path/containing/the reads/\\ cd /to/the/path/containing/the reads/\\
 source activate spades\\ source activate spades\\
-metaspades.py -t 20 -m 230 --pe1-1 Blah_R1_PairNtrim.fq --pe1-2 Blah_R2_PairNtrim.fq  --pe-s Blah_R1R2unPairNtrim.fq -o Metaspades_Blah_output\\+metaspades.py -t 20 -m 230 --pe1-1 Blah_R1_PairNtrim.fq --pe1-2 Blah_R2_PairNtrim.fq  --pe-s Blah_R1R2unPairNtrim.fq -o /path/to/Metaspades_Blah_output\\
 conda deactivate conda deactivate
short_read_assembly.1568027271.txt.gz · Last modified: by 24.138.68.92