transdecoder_for_transcriptomes
Differences
This shows you the differences between two versions of the page.
| Both sides previous revisionPrevious revision | |||
| transdecoder_for_transcriptomes [2017/06/19 06:55] – Formatting 129.173.90.165 | transdecoder_for_transcriptomes [2017/08/09 13:31] (current) – 129.173.94.20 | ||
|---|---|---|---|
| Line 6: | Line 6: | ||
| 1. To run, you will need to make a copy of your transcriptome fasta file in a new folder. Use the command line: | 1. To run, you will need to make a copy of your transcriptome fasta file in a new folder. Use the command line: | ||
| - | * / | + | < |
| + | / | ||
| + | </ | ||
| 2. Once this has finished, you will run the TransDecoder Prediction to get the final coding region predictions. Use the following command line, with the same transcriptome file: | 2. Once this has finished, you will run the TransDecoder Prediction to get the final coding region predictions. Use the following command line, with the same transcriptome file: | ||
| - | * / | + | < |
| + | / | ||
| + | </ | ||
| This will result in your final predictions, | This will result in your final predictions, | ||
| You can rename the headers or remove certain characters you do not want (such as *) by: | You can rename the headers or remove certain characters you do not want (such as *) by: | ||
| - | * awk '/ | + | < |
| - | | + | awk '/ |
| + | sed 's/*/ /g' inputfilename > outputfilename | ||
| + | </ | ||
transdecoder_for_transcriptomes.1497866123.txt.gz · Last modified: by 129.173.90.165