trinity_for_assembling_transcript_reads
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| trinity_for_assembling_transcript_reads [2023/04/24 15:50] – 134.190.232.186 | trinity_for_assembling_transcript_reads [2025/11/07 11:27] (current) – 134.190.191.186 | ||
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| ====== Trinity - Assembly of transcriptome reads ====== | ====== Trinity - Assembly of transcriptome reads ====== | ||
| - | Documentation by Shelby Williams (last updated by D. Salas-Leiva, | + | Documentation by Shelby Williams (last updated by D. Salas-Leiva, |
| Trinity is an assembler of RNA-seq reads, after they have been trimmed. Trinity uses three programs (Inchworm, Chrysalis, and Butterfly) to assemble large volumes of transcriptome reads. The output of Trinity is the Trinity.fasta file found in the / | Trinity is an assembler of RNA-seq reads, after they have been trimmed. Trinity uses three programs (Inchworm, Chrysalis, and Butterfly) to assemble large volumes of transcriptome reads. The output of Trinity is the Trinity.fasta file found in the / | ||
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| #$ -pe threaded 10 | #$ -pe threaded 10 | ||
| - | source activate trinity-2.11-with-workaround | + | ##source activate trinity-2.11-with-workaround |
| + | ## this special built is version is 2.11 - use new version now instead see below | ||
| + | |||
| + | source activate trinity | ||
| + | ## this is version 2.15.2 | ||
| - | # this special built is version is 2.11 | ||
| Trinity \ | Trinity \ | ||
| --seqType fq \ | --seqType fq \ | ||
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