Differences

This shows you the differences between two versions of the page.

--- who_looks_after_which_page [2019/09/09 07:57] – 24.138.68.92
+++ who_looks_after_which_page [2024/10/28 09:51] (current) – 134.190.221.230
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+=====This page is quite obsolete - Jason=====
 Distinguishin LGT from contaminants
 Using UNIX -Bruce
-BLAST and PLAST
+BLAST and PLAST -Dayana
 Taxonomy recovery
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 Using perun -Bruce
-Decontamination using a metagenomics approach
+Decontamination using a metagenomics approach -Dayana
-Multi-gene phylogeny pipeline
+Decontamination using read classifier (a.k.a Eukfinder) -Dayana
+Multi-gene phylogeny pipeline - Shelby
 TransDecoder for transcriptomes
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 Cleaning of Illumina Paired end reads
 Benchmarking Universal Single-Copy Orthologs (BUSCO)
 Trinity for assembling transcript reads
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 Search Protocol for Orthologs of Components of Key molecular systems (SPOCK)...\\ SORRY this is not up and running yet. Please complain with Dayana!
-Ortologs searches using panther HMMRs
+Ortologs searches using panther HMMRs -Dayana
 DECONSEQ for decontaminating reads
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 ASSEMBLING LONG READ DATA
-Dayana Salas - Utility scripts(taxonomy, coloring trees, phylogenetics, mixture models, domain architecture and more)
+Dayana Salas - Utility scripts(taxonomy, coloring trees, phylogenetics, mixture models, domain architecture and more) -Dayana
 Mapping RNAseq data to your genome
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 Other software locations -Bruce
-Databases locations
+Databases locations -Dayana
 Gene prediction framework -Dayana
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 From Nanopore to Gene Prediction
+Short read assembly
+Python Resources
+depth and breadth of coverage
+Binning tools
+Visualizing mitochondrial genomes