cgal
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CGAL: Computing Genome Assembly Likelihoods Documentation by Sarah Shah
Publication: https://doi.org/10.1186/gb-2013-14-1-r8
Useful for comparing results of different genome assemblies. CGAL “evaluates the uniformity of coverage of the assembly, taking into account errors in the reads, the insert size distribution and the extent of unassembled data”. The final output is a negative value; the closer to zero, the better.
1) Map DNA short reads to your genome using bowtie2. Here is an example:
cgal.1541094165.txt.gz · Last modified: by 129.173.88.84