taxonomy_recovery
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Quick taxonomy recovery using the Accession numbers from either a Blast or Plast output:
use acc2tax program available in the environmental path.
here is an example of how to run it for protein IDs (-p):
acc2tax -i /db1/extra-data-sets/Acc2tax/acc2taxIN_example -p -d /db1/extra-data-sets/Acc2tax/Acc2Tax_071119 -o taxonomy.out
don't forget to make sure that your input file contains only the accession numbers without their version, see the example file given above.
acc2tax databases:
1. /db1/extra-data-sets/Acc2tax/Acc2Tax_071119 (Up to date July 11, 2019)
2. /scratch3/rogerlab_databases/other_dbs/acc2tax_Sept2020 (Up to date Sept 28, 2020)
taxonomy_recovery.1601325257.txt.gz · Last modified: by 170.10.250.122