Differences

This shows you the differences between two versions of the page.

--- available_software [2018/05/11 07:12] – pillai
+++ available_software [2026/03/19 10:46] (current) – pillai
@@ Line 1: / Line 1: @@
-Software that are not part of the Linux distribution are installed to ''<color darkred>/opt/perun</color>'' and ''<color darkred>/scratch2/software</color>'' on the compute nodes. ''<color darkred>/opt/perun/bin</color>'' is already included in the ''<color darkred>PATH</color>''. Some software not included in the ''<color darkred>PATH</color>'' like ''<color red>Trinity</color>'' are available for use at ''<color darkred>/opt/perun</color>''.
+Bulk of the software is installed via ''<color darkred>Conda</color>''.
+|  **List all env**  ||  ''<color darkred>conda env list</color>''  |
+|  **Use an env**  ||  ''<color darkred>source activate <env name></color>''  |
+|  **Show versions**  ||  ''<color darkred>conda list -n <env name></color>''  |
+|  **Exit an env**  ||  ''<color darkred>source deactivate</color>''  |
+|  **To use an old environment from previous setup**  ||  ''<color darkred>source activate /scratch2/software/anaconda/envs/<env name></color>''  |
+**To enable old environments with priority to new environments when present**
+**__<color blue>Add the following to your ~/.condarc</color>__**
+<code bash>
+envs_dirs:
+  - <personal conda env paths if they exist like ~/.conda/envs>
+  - /scratch5/software/miniconda3/envs
+  - /scratch2/software/anaconda/envs
+</code>
+[[conda-env|Existing environments]]