Differences

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--- blast_protocol [2022/09/06 14:36] – 134.190.232.106
+++ blast_protocol [2022/09/06 14:49] (current) – 134.190.232.106
@@ Line 118: / Line 118: @@
 do
-diamond blastp -d /misc/scratch3/rogerlab_databases/other_dbs/nr_02032022/diamond_nr.dmnd -q $line -o Diamond_nr.$line.tsv --very-sensitive
+diamond blastp -p 40 -k 5 -e 1e-10 -f 6 qseqid sseqid pident length mismatch gapopen qstart qend sstart send evalue bitscore stitle salltitles --header -d /misc/scratch3/rogerlab_databases/other_dbs/nr_02032022/diamond_nr.dmnd -q $line -o BLASTP_nr.$line.tsv --sensitive
 done <$1